diff --git a/src/nf_modules/bedtools/main.nf b/src/nf_modules/bedtools/main.nf
index 22361ed8bb4977a333d7992a7d8578b1bf1e8a72..f55991eb375e9a8dd4e02200b63b58b019c01291 100644
--- a/src/nf_modules/bedtools/main.nf
+++ b/src/nf_modules/bedtools/main.nf
@@ -31,7 +31,7 @@ process bam_to_fastq_singleend {
   path bam
 
   output:
-  path "*.fastq", emit: fastq
+  tuple val(bam.baseName), path("*.fastq"), emit: fastq
 
   script:
 """
@@ -50,7 +50,7 @@ process bam_to_fastq_pairedend {
   path bam
 
   output:
-  path "*.fastq", emit: fastq
+  tuple val(bam.baseName), path("*.fastq"), emit: fastq
 
   script:
 """