diff --git a/src/nf_modules/bedtools/main.nf b/src/nf_modules/bedtools/main.nf index 9400abf4e55bcf57f52e896b5f1d41e1a8fe8bfa..674a9621d9856a4fb0ccb6123ed91db2386d537c 100644 --- a/src/nf_modules/bedtools/main.nf +++ b/src/nf_modules/bedtools/main.nf @@ -109,13 +109,13 @@ process bam_to_bedgraph { tuple val(bam_id), path(bam) output: - tuple val(bam_id), path("*.bg"), emit: bedgraph + tuple val(bam_id), path("*.bed"), emit: bed script: """ bedtools genomecov \ ${params.bam_to_bedgraph} \ -ibam ${bam} \ - -bg > ${bam.simpleName}.bg + -bg > ${bam.simpleName}.bed """ }