From 2f8070de854927a83c610e42322b2dadb08d6397 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 18 Feb 2021 10:22:16 +0100
Subject: [PATCH] macs3: fix call-summits option
---
src/nf_modules/macs3/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/macs3/main.nf b/src/nf_modules/macs3/main.nf
index 4dcc9cd4..9f327031 100644
--- a/src/nf_modules/macs3/main.nf
+++ b/src/nf_modules/macs3/main.nf
@@ -20,7 +20,7 @@ process peak_calling {
"""
macs3 callpeak \
--treatment ${bam_ip} \
- --call-summits True \
+ --call-summits \
--control ${bam_control} \
--keep-dup all \
--name ${bam_ip.simpleName} \
@@ -55,7 +55,7 @@ awk '{print \$1"\t"\$2"\t"\$3"\t.\t+\t"\$4}' ${bg_control} > \
${bg_control.simpleName}.bed
macs3 callpeak \
--treatment ${bg_ip.simpleName}.bed \
- --call-summits True \
+ --call-summits \
--control ${bg_control.simpleName}.bed \
--keep-dup all \
--name ${bg_ip.simpleName} \
--
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