diff --git a/src/nf_modules/macs3/main.nf b/src/nf_modules/macs3/main.nf index 4dcc9cd4fc1ef8acf7d752c72f4327196983e0fd..9f3270311f309760455a5482ae6d818e359e2a65 100644 --- a/src/nf_modules/macs3/main.nf +++ b/src/nf_modules/macs3/main.nf @@ -20,7 +20,7 @@ process peak_calling { """ macs3 callpeak \ --treatment ${bam_ip} \ - --call-summits True \ + --call-summits \ --control ${bam_control} \ --keep-dup all \ --name ${bam_ip.simpleName} \ @@ -55,7 +55,7 @@ awk '{print \$1"\t"\$2"\t"\$3"\t.\t+\t"\$4}' ${bg_control} > \ ${bg_control.simpleName}.bed macs3 callpeak \ --treatment ${bg_ip.simpleName}.bed \ - --call-summits True \ + --call-summits \ --control ${bg_control.simpleName}.bed \ --keep-dup all \ --name ${bg_ip.simpleName} \