From 28cb69411cc90a16830a7d4f7d4633f46bcc684a Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent@modolo.fr> Date: Wed, 20 Nov 2019 14:52:37 +0100 Subject: [PATCH] update docker script for v0.4.0 --- src/.docker_modules/bcftools/1.7/docker_init.sh | 3 ++- src/.docker_modules/bedtools/2.25.0/docker_init.sh | 3 ++- src/.docker_modules/bioawk/1.0/docker_init.sh | 3 ++- src/.docker_modules/bowtie/1.2.2/docker_init.sh | 3 ++- src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh | 3 ++- src/.docker_modules/bwa/0.7.17/docker_init.sh | 3 ++- src/.docker_modules/canu/1.6/docker_init.sh | 3 ++- src/.docker_modules/cutadapt/1.14/docker_init.sh | 3 ++- src/.docker_modules/cutadapt/1.15/docker_init.sh | 3 ++- src/.docker_modules/cutadapt/2.1/docker_init.sh | 3 ++- src/.docker_modules/deeptools/3.0.2/docker_init.sh | 3 ++- src/.docker_modules/deeptools/3.1.1/docker_init.sh | 3 ++- src/.docker_modules/fastp/0.19.7/docker_init.sh | 3 ++- src/.docker_modules/fastqc/0.11.5/docker_init.sh | 3 ++- src/.docker_modules/file_handle/0.1.1/docker_init.sh | 3 ++- src/.docker_modules/gatk/4.0.8.1/docker_init.sh | 3 ++- src/.docker_modules/hisat2/2.0.0/docker_init.sh | 3 ++- src/.docker_modules/hisat2/2.1.0/docker_init.sh | 3 ++- src/.docker_modules/htseq/0.11.2/docker_init.sh | 3 ++- src/.docker_modules/htseq/0.8.0/docker_init.sh | 3 ++- src/.docker_modules/kallisto/0.43.1/docker_init.sh | 3 ++- src/.docker_modules/kallisto/0.44.0/docker_init.sh | 3 ++- src/.docker_modules/macs2/2.1.2/docker_init.sh | 3 ++- src/.docker_modules/multiqc/1.0/docker_init.sh | 3 ++- src/.docker_modules/multiqc/1.7/docker_init.sh | 3 ++- src/.docker_modules/music/6613c53/docker_init.sh | 3 ++- src/.docker_modules/picard/2.18.11/docker_init.sh | 3 ++- src/.docker_modules/pigz/2.4/docker_init.sh | 3 ++- src/.docker_modules/python/3.8/docker_init.sh | 3 ++- src/.docker_modules/r/3.5.3/docker_init.sh | 3 ++- src/.docker_modules/rsem/1.3.0/docker_init.sh | 3 ++- src/.docker_modules/salmon/0.8.2/docker_init.sh | 3 ++- src/.docker_modules/sambamba/0.6.7/docker_init.sh | 3 ++- src/.docker_modules/sambamba/0.6.9/docker_init.sh | 2 ++ src/.docker_modules/samblaster/0.1.24/docker_init.sh | 3 ++- src/.docker_modules/samtools/1.7/docker_init.sh | 3 ++- src/.docker_modules/sratoolkit/2.8.2/docker_init.sh | 3 ++- src/.docker_modules/star/2.7.3a/docker_init.sh | 1 + src/.docker_modules/subread/1.6.4/docker_init.sh | 3 ++- src/.docker_modules/tophat/2.1.1/docker_init.sh | 3 ++- src/.docker_modules/trimmomatic/0.36/docker_init.sh | 3 ++- src/.docker_modules/ucsc/375/docker_init.sh | 3 ++- src/.docker_modules/umi_tools/0.5.4/docker_init.sh | 3 ++- src/.docker_modules/umi_tools/1.0.0/docker_init.sh | 3 ++- src/.docker_modules/urqt/d62c1f8/docker_init.sh | 3 ++- 45 files changed, 89 insertions(+), 43 deletions(-) diff --git a/src/.docker_modules/bcftools/1.7/docker_init.sh b/src/.docker_modules/bcftools/1.7/docker_init.sh index 043a63f0..9fea98d1 100755 --- a/src/.docker_modules/bcftools/1.7/docker_init.sh +++ b/src/.docker_modules/bcftools/1.7/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/bcftools/1.7 -t 'lbmc/bcftools:1.7' +docker build src/.docker_modules/bcftools/1.7 -t 'lbmc/bcftools:1.7' +docker push lbmc/bcftools:1.7 diff --git a/src/.docker_modules/bedtools/2.25.0/docker_init.sh b/src/.docker_modules/bedtools/2.25.0/docker_init.sh index 37c05b9d..e95165ab 100755 --- a/src/.docker_modules/bedtools/2.25.0/docker_init.sh +++ b/src/.docker_modules/bedtools/2.25.0/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/bedtools/2.25.0 -t 'lbmc/bedtools:2.25.0' +docker build src/.docker_modules/bedtools/2.25.0 -t 'lbmc/bedtools:2.25.0' +docker push lbmc/bedtools:2.25.0 diff --git a/src/.docker_modules/bioawk/1.0/docker_init.sh b/src/.docker_modules/bioawk/1.0/docker_init.sh index abbb1e23..50704774 100755 --- a/src/.docker_modules/bioawk/1.0/docker_init.sh +++ b/src/.docker_modules/bioawk/1.0/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/bioawk/1.0 -t 'lbmc/bioawk:1.0' +docker build src/.docker_modules/bioawk/1.0 -t 'lbmc/bioawk:1.0' +docker push lbmc/bioawk:1.0 diff --git a/src/.docker_modules/bowtie/1.2.2/docker_init.sh b/src/.docker_modules/bowtie/1.2.2/docker_init.sh index 46f45027..0328b036 100755 --- a/src/.docker_modules/bowtie/1.2.2/docker_init.sh +++ b/src/.docker_modules/bowtie/1.2.2/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/bowtie/1.2.2 -t 'lbmc/bowtie:1.2.2' +docker build src/.docker_modules/bowtie/1.2.2 -t 'lbmc/bowtie:1.2.2' +docker push lbmc/bowtie:1.2.2 diff --git a/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh b/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh index 83cc97d2..b3ff515e 100755 --- a/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh +++ b/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/bowtie2/2.3.4.1 -t 'lbmc/bowtie2:2.3.4.1' +docker build src/.docker_modules/bowtie2/2.3.4.1 -t 'lbmc/bowtie2:2.3.4.1' +docker push lbmc/bowtie2:2.3.4.1 diff --git a/src/.docker_modules/bwa/0.7.17/docker_init.sh b/src/.docker_modules/bwa/0.7.17/docker_init.sh index 1b1f27f1..559e37b9 100755 --- a/src/.docker_modules/bwa/0.7.17/docker_init.sh +++ b/src/.docker_modules/bwa/0.7.17/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/bwa/0.7.17 -t 'lbmc/bwa:0.7.17' +docker build src/.docker_modules/bwa/0.7.17 -t 'lbmc/bwa:0.7.17' +docker push lbmc/bwa:0.7.17 diff --git a/src/.docker_modules/canu/1.6/docker_init.sh b/src/.docker_modules/canu/1.6/docker_init.sh index 0b96ce1e..ed22a433 100755 --- a/src/.docker_modules/canu/1.6/docker_init.sh +++ b/src/.docker_modules/canu/1.6/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/canu/1.6 -t 'lbmc/canu:1.6' +docker build src/.docker_modules/canu/1.6 -t 'lbmc/canu:1.6' +docker push lbmc/canu:1.6 diff --git a/src/.docker_modules/cutadapt/1.14/docker_init.sh b/src/.docker_modules/cutadapt/1.14/docker_init.sh index 7390c9f6..e0821b65 100755 --- a/src/.docker_modules/cutadapt/1.14/docker_init.sh +++ b/src/.docker_modules/cutadapt/1.14/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/cutadapt/1.14 -t 'lbmc/cutadapt:1.14' +docker build src/.docker_modules/cutadapt/1.14 -t 'lbmc/cutadapt:1.14' +docker push lbmc/cutadapt:1.14 diff --git a/src/.docker_modules/cutadapt/1.15/docker_init.sh b/src/.docker_modules/cutadapt/1.15/docker_init.sh index c5ead618..ed6c9837 100755 --- a/src/.docker_modules/cutadapt/1.15/docker_init.sh +++ b/src/.docker_modules/cutadapt/1.15/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/cutadapt/1.15 -t 'lbmc/cutadapt:1.15' +docker build src/.docker_modules/cutadapt/1.15 -t 'lbmc/cutadapt:1.15' +docker push lbmc/cutadapt:1.15 diff --git a/src/.docker_modules/cutadapt/2.1/docker_init.sh b/src/.docker_modules/cutadapt/2.1/docker_init.sh index 4b55d68e..92b62694 100755 --- a/src/.docker_modules/cutadapt/2.1/docker_init.sh +++ b/src/.docker_modules/cutadapt/2.1/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/cutadapt/2.1 -t 'lbmc/cutadapt:2.1' +docker build src/.docker_modules/cutadapt/2.1 -t 'lbmc/cutadapt:2.1' +docker push lbmc/cutadapt:2.1 diff --git a/src/.docker_modules/deeptools/3.0.2/docker_init.sh b/src/.docker_modules/deeptools/3.0.2/docker_init.sh index cb392df1..4ec75a19 100755 --- a/src/.docker_modules/deeptools/3.0.2/docker_init.sh +++ b/src/.docker_modules/deeptools/3.0.2/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/deeptools/3.0.2 -t 'lbmc/deeptools:3.0.2' +docker build src/.docker_modules/deeptools/3.0.2 -t 'lbmc/deeptools:3.0.2' +docker push lbmc/deeptools:3.0.2 diff --git a/src/.docker_modules/deeptools/3.1.1/docker_init.sh b/src/.docker_modules/deeptools/3.1.1/docker_init.sh index 7f0e94ff..ef698402 100755 --- a/src/.docker_modules/deeptools/3.1.1/docker_init.sh +++ b/src/.docker_modules/deeptools/3.1.1/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/deeptools/3.1.1 -t 'lbmc/deeptools:3.1.1' +docker build src/.docker_modules/deeptools/3.1.1 -t 'lbmc/deeptools:3.1.1' +docker push lbmc/deeptools:3.1.1 diff --git a/src/.docker_modules/fastp/0.19.7/docker_init.sh b/src/.docker_modules/fastp/0.19.7/docker_init.sh index 51b72579..48c21ffa 100755 --- a/src/.docker_modules/fastp/0.19.7/docker_init.sh +++ b/src/.docker_modules/fastp/0.19.7/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/fastp/0.19.7 -t 'lbmc/fastp:0.19.7' +docker build src/.docker_modules/fastp/0.19.7 -t 'lbmc/fastp:0.19.7' +docker push lbmc/fastp:0.19.7 diff --git a/src/.docker_modules/fastqc/0.11.5/docker_init.sh b/src/.docker_modules/fastqc/0.11.5/docker_init.sh index d42d456c..fd62c47b 100755 --- a/src/.docker_modules/fastqc/0.11.5/docker_init.sh +++ b/src/.docker_modules/fastqc/0.11.5/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/fastqc/0.11.5 -t 'lbmc/fastqc:0.11.5' +docker build src/.docker_modules/fastqc/0.11.5 -t 'lbmc/fastqc:0.11.5' +docker push lbmc/fastqc:0.11.5 diff --git a/src/.docker_modules/file_handle/0.1.1/docker_init.sh b/src/.docker_modules/file_handle/0.1.1/docker_init.sh index 8fbeec24..1dded20b 100755 --- a/src/.docker_modules/file_handle/0.1.1/docker_init.sh +++ b/src/.docker_modules/file_handle/0.1.1/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/file_handle/0.1.1 -t 'lbmc/file_handle:0.1.1' +docker build src/.docker_modules/file_handle/0.1.1 -t 'lbmc/file_handle:0.1.1' +docker push lbmc/file_handle:0.1.1 diff --git a/src/.docker_modules/gatk/4.0.8.1/docker_init.sh b/src/.docker_modules/gatk/4.0.8.1/docker_init.sh index 53631655..8df1ea88 100755 --- a/src/.docker_modules/gatk/4.0.8.1/docker_init.sh +++ b/src/.docker_modules/gatk/4.0.8.1/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/gatk/4.0.8.1 -t 'lbmc/gatk:4.0.8.1' +docker build src/.docker_modules/gatk/4.0.8.1 -t 'lbmc/gatk:4.0.8.1' +docker push lbmc/gatk:4.0.8.1 diff --git a/src/.docker_modules/hisat2/2.0.0/docker_init.sh b/src/.docker_modules/hisat2/2.0.0/docker_init.sh index cff5d127..eae7c398 100755 --- a/src/.docker_modules/hisat2/2.0.0/docker_init.sh +++ b/src/.docker_modules/hisat2/2.0.0/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/hisat2/2.0.0 -t 'lbmc/hisat2:2.0.0' +docker build src/.docker_modules/hisat2/2.0.0 -t 'lbmc/hisat2:2.0.0' +docker push lbmc/hisat2:2.0.0 diff --git a/src/.docker_modules/hisat2/2.1.0/docker_init.sh b/src/.docker_modules/hisat2/2.1.0/docker_init.sh index bbae87ce..b25f8ac2 100755 --- a/src/.docker_modules/hisat2/2.1.0/docker_init.sh +++ b/src/.docker_modules/hisat2/2.1.0/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/hisat2/2.1.0 -t 'lbmc/hisat2:2.1.0' +docker build src/.docker_modules/hisat2/2.1.0 -t 'lbmc/hisat2:2.1.0' +docker push lbmc/hisat2:2.1.0 diff --git a/src/.docker_modules/htseq/0.11.2/docker_init.sh b/src/.docker_modules/htseq/0.11.2/docker_init.sh index f2ead722..d697a624 100755 --- a/src/.docker_modules/htseq/0.11.2/docker_init.sh +++ b/src/.docker_modules/htseq/0.11.2/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/htseq/0.11.2 -t 'lbmc/htseq:0.11.2' +docker build src/.docker_modules/htseq/0.11.2 -t 'lbmc/htseq:0.11.2' +docker push lbmc/htseq:0.11.2 diff --git a/src/.docker_modules/htseq/0.8.0/docker_init.sh b/src/.docker_modules/htseq/0.8.0/docker_init.sh index 09cf7277..d41dc8c7 100755 --- a/src/.docker_modules/htseq/0.8.0/docker_init.sh +++ b/src/.docker_modules/htseq/0.8.0/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/htseq/0.8.0 -t 'lbmc/htseq:0.8.0' +docker build src/.docker_modules/htseq/0.8.0 -t 'lbmc/htseq:0.8.0' +docker push lbmc/htseq:0.8.0 diff --git a/src/.docker_modules/kallisto/0.43.1/docker_init.sh b/src/.docker_modules/kallisto/0.43.1/docker_init.sh index 1ff3aca3..384eb6a0 100755 --- a/src/.docker_modules/kallisto/0.43.1/docker_init.sh +++ b/src/.docker_modules/kallisto/0.43.1/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/kallisto/0.43.1 -t 'lbmc/kallisto:0.43.1' +docker build src/.docker_modules/kallisto/0.43.1 -t 'lbmc/kallisto:0.43.1' +docker push lbmc/kallisto:0.43.1 diff --git a/src/.docker_modules/kallisto/0.44.0/docker_init.sh b/src/.docker_modules/kallisto/0.44.0/docker_init.sh index 9e071b69..e74899cb 100755 --- a/src/.docker_modules/kallisto/0.44.0/docker_init.sh +++ b/src/.docker_modules/kallisto/0.44.0/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/kallisto/0.44.0 -t 'lbmc/kallisto:0.44.0' +docker build src/.docker_modules/kallisto/0.44.0 -t 'lbmc/kallisto:0.44.0' +docker push lbmc/kallisto:0.44.0 diff --git a/src/.docker_modules/macs2/2.1.2/docker_init.sh b/src/.docker_modules/macs2/2.1.2/docker_init.sh index 02e9a382..2676105e 100755 --- a/src/.docker_modules/macs2/2.1.2/docker_init.sh +++ b/src/.docker_modules/macs2/2.1.2/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/macs2/2.1.2 -t 'lbmc/macs2:2.1.2' +docker build src/.docker_modules/macs2/2.1.2 -t 'lbmc/macs2:2.1.2' +docker push lbmc/macs2:2.1.2 diff --git a/src/.docker_modules/multiqc/1.0/docker_init.sh b/src/.docker_modules/multiqc/1.0/docker_init.sh index 0bab0761..f71a9164 100755 --- a/src/.docker_modules/multiqc/1.0/docker_init.sh +++ b/src/.docker_modules/multiqc/1.0/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/multiqc/1.0 -t 'lbmc/multiqc:1.0' +docker build src/.docker_modules/multiqc/1.0 -t 'lbmc/multiqc:1.0' +docker push lbmc/multiqc:1.0 diff --git a/src/.docker_modules/multiqc/1.7/docker_init.sh b/src/.docker_modules/multiqc/1.7/docker_init.sh index fb08cc12..926ffe1b 100755 --- a/src/.docker_modules/multiqc/1.7/docker_init.sh +++ b/src/.docker_modules/multiqc/1.7/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/multiqc/1.7 -t 'lbmc/multiqc:1.7' +docker build src/.docker_modules/multiqc/1.7 -t 'lbmc/multiqc:1.7' +docker push lbmc/multiqc:1.7 diff --git a/src/.docker_modules/music/6613c53/docker_init.sh b/src/.docker_modules/music/6613c53/docker_init.sh index 3666dfaa..9bcf3037 100755 --- a/src/.docker_modules/music/6613c53/docker_init.sh +++ b/src/.docker_modules/music/6613c53/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/music/6613c53 -t 'lbmc/music:6613c53' +docker build src/.docker_modules/music/6613c53 -t 'lbmc/music:6613c53' +docker push lbmc/music:6613c53 diff --git a/src/.docker_modules/picard/2.18.11/docker_init.sh b/src/.docker_modules/picard/2.18.11/docker_init.sh index 3dc15851..2bd4802e 100755 --- a/src/.docker_modules/picard/2.18.11/docker_init.sh +++ b/src/.docker_modules/picard/2.18.11/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/picard/2.18.11 -t 'lbmc/picard:2.18.11' +docker build src/.docker_modules/picard/2.18.11 -t 'lbmc/picard:2.18.11' +docker push lbmc/picard:2.18.11 diff --git a/src/.docker_modules/pigz/2.4/docker_init.sh b/src/.docker_modules/pigz/2.4/docker_init.sh index 84e508a4..2c473f11 100755 --- a/src/.docker_modules/pigz/2.4/docker_init.sh +++ b/src/.docker_modules/pigz/2.4/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/pigz/2.4 -t 'lbmc/pigz:2.4' +docker build src/.docker_modules/pigz/2.4 -t 'lbmc/pigz:2.4' +docker push lbmc/pigz:2.4 diff --git a/src/.docker_modules/python/3.8/docker_init.sh b/src/.docker_modules/python/3.8/docker_init.sh index 18b86e72..a0357e76 100755 --- a/src/.docker_modules/python/3.8/docker_init.sh +++ b/src/.docker_modules/python/3.8/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/python/3.8 -t 'lbmc/python:3.8' +docker build src/.docker_modules/python/3.8 -t 'lbmc/python:3.8' +docker push lbmc/python:3.8 diff --git a/src/.docker_modules/r/3.5.3/docker_init.sh b/src/.docker_modules/r/3.5.3/docker_init.sh index e9cb205e..8e587ecb 100755 --- a/src/.docker_modules/r/3.5.3/docker_init.sh +++ b/src/.docker_modules/r/3.5.3/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/r/3.5.3 -t 'lbmc/r:3.5.3' +docker build src/.docker_modules/r/3.5.3 -t 'lbmc/r:3.5.3' +docker push lbmc/r:3.5.3 diff --git a/src/.docker_modules/rsem/1.3.0/docker_init.sh b/src/.docker_modules/rsem/1.3.0/docker_init.sh index 2907c0ea..14a4a6e4 100755 --- a/src/.docker_modules/rsem/1.3.0/docker_init.sh +++ b/src/.docker_modules/rsem/1.3.0/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/rsem/1.3.0 -t 'lbmc/rsem:1.3.0' +docker build src/.docker_modules/rsem/1.3.0 -t 'lbmc/rsem:1.3.0' +docker push lbmc/rsem:1.3.0 diff --git a/src/.docker_modules/salmon/0.8.2/docker_init.sh b/src/.docker_modules/salmon/0.8.2/docker_init.sh index 3a776c08..59477e7d 100755 --- a/src/.docker_modules/salmon/0.8.2/docker_init.sh +++ b/src/.docker_modules/salmon/0.8.2/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/salmon/0.8.2 -t 'lbmc/salmon:0.8.2' +docker build src/.docker_modules/salmon/0.8.2 -t 'lbmc/salmon:0.8.2' +docker push lbmc/salmon:0.8.2 diff --git a/src/.docker_modules/sambamba/0.6.7/docker_init.sh b/src/.docker_modules/sambamba/0.6.7/docker_init.sh index d203b20c..bf65bcbe 100755 --- a/src/.docker_modules/sambamba/0.6.7/docker_init.sh +++ b/src/.docker_modules/sambamba/0.6.7/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/sambamba/0.6.7 -t 'lbmc/sambamba:0.6.7' +docker build src/.docker_modules/sambamba/0.6.7 -t 'lbmc/sambamba:0.6.7' +docker push lbmc/sambamba:0.6.7 diff --git a/src/.docker_modules/sambamba/0.6.9/docker_init.sh b/src/.docker_modules/sambamba/0.6.9/docker_init.sh index 5a0e2fcc..d740a4f2 100755 --- a/src/.docker_modules/sambamba/0.6.9/docker_init.sh +++ b/src/.docker_modules/sambamba/0.6.9/docker_init.sh @@ -1,2 +1,4 @@ #!/bin/sh docker build src/.docker_modules/sambamba/0.6.9 -t 'lbmc/sambamba:0.6.9' +docker push lbmc/sambamba:0.6.9 +docker push lbmc/sambamba:0.6.9 diff --git a/src/.docker_modules/samblaster/0.1.24/docker_init.sh b/src/.docker_modules/samblaster/0.1.24/docker_init.sh index 991b92cb..4fb8a737 100755 --- a/src/.docker_modules/samblaster/0.1.24/docker_init.sh +++ b/src/.docker_modules/samblaster/0.1.24/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/samblaster/0.1.24 -t 'lbmc/samblaster:0.1.24' +docker build src/.docker_modules/samblaster/0.1.24 -t 'lbmc/samblaster:0.1.24' +docker push lbmc/samblaster:0.1.24 diff --git a/src/.docker_modules/samtools/1.7/docker_init.sh b/src/.docker_modules/samtools/1.7/docker_init.sh index 4c47e22b..a5819309 100755 --- a/src/.docker_modules/samtools/1.7/docker_init.sh +++ b/src/.docker_modules/samtools/1.7/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/samtools/1.7 -t 'lbmc/samtools:1.7' +docker build src/.docker_modules/samtools/1.7 -t 'lbmc/samtools:1.7' +docker push lbmc/samtools:1.7 diff --git a/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh b/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh index a7f547e1..759c2835 100755 --- a/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh +++ b/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/sratoolkit/2.8.2 -t 'lbmc/sratoolkit:2.8.2' +docker build src/.docker_modules/sratoolkit/2.8.2 -t 'lbmc/sratoolkit:2.8.2' +docker push lbmc/sratoolkit:2.8.2 diff --git a/src/.docker_modules/star/2.7.3a/docker_init.sh b/src/.docker_modules/star/2.7.3a/docker_init.sh index 0e048f27..c3e325fb 100755 --- a/src/.docker_modules/star/2.7.3a/docker_init.sh +++ b/src/.docker_modules/star/2.7.3a/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh docker build src/.docker_modules/star/2.7.3a/ -t 'lbmc/star:2.7.3a' +docker push lbmc/star:2.7.3a diff --git a/src/.docker_modules/subread/1.6.4/docker_init.sh b/src/.docker_modules/subread/1.6.4/docker_init.sh index 574c2031..9e8dc157 100755 --- a/src/.docker_modules/subread/1.6.4/docker_init.sh +++ b/src/.docker_modules/subread/1.6.4/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/subread/1.6.4 -t 'lbmc/subread:1.6.4' +docker build src/.docker_modules/subread/1.6.4 -t 'lbmc/subread:1.6.4' +docker push lbmc/subread:1.6.4 diff --git a/src/.docker_modules/tophat/2.1.1/docker_init.sh b/src/.docker_modules/tophat/2.1.1/docker_init.sh index a6125a86..212fb6af 100755 --- a/src/.docker_modules/tophat/2.1.1/docker_init.sh +++ b/src/.docker_modules/tophat/2.1.1/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/tophat/2.1.1 -t 'lbmc/tophat:2.1.1' +docker build src/.docker_modules/tophat/2.1.1 -t 'lbmc/tophat:2.1.1' +docker push lbmc/tophat:2.1.1 diff --git a/src/.docker_modules/trimmomatic/0.36/docker_init.sh b/src/.docker_modules/trimmomatic/0.36/docker_init.sh index 27c970f4..9bcd98b0 100755 --- a/src/.docker_modules/trimmomatic/0.36/docker_init.sh +++ b/src/.docker_modules/trimmomatic/0.36/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/trimmomatic/0.36 -t 'lbmc/trimmomatic:0.36' +docker build src/.docker_modules/trimmomatic/0.36 -t 'lbmc/trimmomatic:0.36' +docker push lbmc/trimmomatic:0.36 diff --git a/src/.docker_modules/ucsc/375/docker_init.sh b/src/.docker_modules/ucsc/375/docker_init.sh index 5fd1371c..e54fadd3 100755 --- a/src/.docker_modules/ucsc/375/docker_init.sh +++ b/src/.docker_modules/ucsc/375/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/ucsc/375/ -t 'lbmc/ucsc:375' +docker build src/.docker_modules/ucsc/375/ -t 'lbmc/ucsc:375' +docker push lbmc/ucsc:375 diff --git a/src/.docker_modules/umi_tools/0.5.4/docker_init.sh b/src/.docker_modules/umi_tools/0.5.4/docker_init.sh index 1b11e25d..6314e3f2 100755 --- a/src/.docker_modules/umi_tools/0.5.4/docker_init.sh +++ b/src/.docker_modules/umi_tools/0.5.4/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0' +docker build src/.docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0' +docker push lbmc/umi_tools:1.0.0 diff --git a/src/.docker_modules/umi_tools/1.0.0/docker_init.sh b/src/.docker_modules/umi_tools/1.0.0/docker_init.sh index 1b11e25d..6314e3f2 100755 --- a/src/.docker_modules/umi_tools/1.0.0/docker_init.sh +++ b/src/.docker_modules/umi_tools/1.0.0/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0' +docker build src/.docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0' +docker push lbmc/umi_tools:1.0.0 diff --git a/src/.docker_modules/urqt/d62c1f8/docker_init.sh b/src/.docker_modules/urqt/d62c1f8/docker_init.sh index bb7f161f..5e09a84f 100755 --- a/src/.docker_modules/urqt/d62c1f8/docker_init.sh +++ b/src/.docker_modules/urqt/d62c1f8/docker_init.sh @@ -1,2 +1,3 @@ #!/bin/sh -docker build src/docker_modules/urqt/d62c1f8 -t 'lbmc/urqt:d62c1f8' +docker build src/.docker_modules/urqt/d62c1f8 -t 'lbmc/urqt:d62c1f8' +docker push lbmc/urqt:d62c1f8 -- GitLab