From 2547f52d9edf547b63752c2d8e3c686d74b3ff01 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 3 May 2019 14:34:57 +0200
Subject: [PATCH] kallisto: indexing config add error log for in2p3
---
src/nf_modules/kallisto/indexing.config | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index a9e74c20..a7604015 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -56,7 +56,8 @@ profiles {
stageInMode = "copy"
stageOutMode = "rsync"
executor = "sge"
- clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
+ clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n \
+ -o /sps/lbmc/lmodolo/logs/ -e /sps/lbmc/lmodolo/logs/"
cpus = 1
queue = 'huge'
}
--
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