From 21f3946619ffcef087849736832e830ce0e4c0ba Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 15 Feb 2021 17:29:48 +0100
Subject: [PATCH] fix bwa indexing
---
src/nf_modules/bwa/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/bwa/main.nf b/src/nf_modules/bwa/main.nf
index 166be133..998643b5 100644
--- a/src/nf_modules/bwa/main.nf
+++ b/src/nf_modules/bwa/main.nf
@@ -10,8 +10,8 @@ process index_fasta {
tuple val(file_id), path(fasta)
output:
- tuple val(fasta.simpleName), path("${fasta.simpleName}.*"), emit: index
- file "*_bwa_report.txt", emit: report
+ tuple val(file_id), path("${fasta.simpleName}.*"), emit: index
+ tuple val(file_id), path("*_bwa_report.txt"), emit: report
script:
"""
--
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