From 21a8f8b804706d1342f15d21d2720d3572ea8ff8 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 17 May 2019 15:48:52 +0200
Subject: [PATCH] config files: updater monocore queues for psmn

---
 src/nf_modules/bedtools/fasta_from_bed.config         | 2 +-
 src/nf_modules/cutadapt/adaptor_removal_paired.config | 2 +-
 src/nf_modules/cutadapt/adaptor_removal_single.config | 2 +-
 src/nf_modules/cutadapt/trimming_paired.config        | 2 +-
 src/nf_modules/cutadapt/trimming_single.config        | 2 +-
 src/nf_modules/fastp/fastp_paired.config              | 2 +-
 src/nf_modules/fastp/fastp_single.config              | 2 +-
 src/nf_modules/fastqc/fastqc_paired.config            | 2 +-
 src/nf_modules/fastqc/fastqc_single.config            | 2 +-
 src/nf_modules/htseq/htseq.config                     | 4 ++--
 src/nf_modules/multiqc/multiqc_paired.config          | 4 ++--
 src/nf_modules/multiqc/multiqc_single.config          | 4 ++--
 src/nf_modules/music/peak_calling_single.config       | 6 +++---
 src/nf_modules/samtools/index_bams.config             | 2 +-
 src/nf_modules/samtools/split_bams.config             | 2 +-
 src/nf_modules/sratoolkit/fastqdump.config            | 2 +-
 src/training_dataset.config                           | 4 ++--
 17 files changed, 23 insertions(+), 23 deletions(-)

diff --git a/src/nf_modules/bedtools/fasta_from_bed.config b/src/nf_modules/bedtools/fasta_from_bed.config
index 7a2e982b..d3cf48e7 100644
--- a/src/nf_modules/bedtools/fasta_from_bed.config
+++ b/src/nf_modules/bedtools/fasta_from_bed.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/cutadapt/adaptor_removal_paired.config b/src/nf_modules/cutadapt/adaptor_removal_paired.config
index b635d8a8..87bf451d 100644
--- a/src/nf_modules/cutadapt/adaptor_removal_paired.config
+++ b/src/nf_modules/cutadapt/adaptor_removal_paired.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/cutadapt/adaptor_removal_single.config b/src/nf_modules/cutadapt/adaptor_removal_single.config
index b635d8a8..87bf451d 100644
--- a/src/nf_modules/cutadapt/adaptor_removal_single.config
+++ b/src/nf_modules/cutadapt/adaptor_removal_single.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/cutadapt/trimming_paired.config b/src/nf_modules/cutadapt/trimming_paired.config
index 3ebf0514..1d067da7 100644
--- a/src/nf_modules/cutadapt/trimming_paired.config
+++ b/src/nf_modules/cutadapt/trimming_paired.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/cutadapt/trimming_single.config b/src/nf_modules/cutadapt/trimming_single.config
index 3ebf0514..1d067da7 100644
--- a/src/nf_modules/cutadapt/trimming_single.config
+++ b/src/nf_modules/cutadapt/trimming_single.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/fastp/fastp_paired.config b/src/nf_modules/fastp/fastp_paired.config
index f4b0d892..c0832fc5 100644
--- a/src/nf_modules/fastp/fastp_paired.config
+++ b/src/nf_modules/fastp/fastp_paired.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/fastp/fastp_single.config b/src/nf_modules/fastp/fastp_single.config
index f4b0d892..c0832fc5 100644
--- a/src/nf_modules/fastp/fastp_single.config
+++ b/src/nf_modules/fastp/fastp_single.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/fastqc/fastqc_paired.config b/src/nf_modules/fastqc/fastqc_paired.config
index bdeaeac7..32ee3d12 100644
--- a/src/nf_modules/fastqc/fastqc_paired.config
+++ b/src/nf_modules/fastqc/fastqc_paired.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/fastqc/fastqc_single.config b/src/nf_modules/fastqc/fastqc_single.config
index bdeaeac7..32ee3d12 100644
--- a/src/nf_modules/fastqc/fastqc_single.config
+++ b/src/nf_modules/fastqc/fastqc_single.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/htseq/htseq.config b/src/nf_modules/htseq/htseq.config
index 90905699..2d24635e 100644
--- a/src/nf_modules/htseq/htseq.config
+++ b/src/nf_modules/htseq/htseq.config
@@ -32,7 +32,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
       withName: counting {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -42,7 +42,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/multiqc/multiqc_paired.config b/src/nf_modules/multiqc/multiqc_paired.config
index 71fb79fc..1c26caa8 100644
--- a/src/nf_modules/multiqc/multiqc_paired.config
+++ b/src/nf_modules/multiqc/multiqc_paired.config
@@ -39,7 +39,7 @@ profiles {
         time = "6h"
         queueSize = 1.70
         pollInterval = '60sec'
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
       withName: multiqc {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -51,7 +51,7 @@ profiles {
         time = "6h"
         queueSize = 1.70
         pollInterval = '60sec'
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/multiqc/multiqc_single.config b/src/nf_modules/multiqc/multiqc_single.config
index fdc12e4e..2420357b 100644
--- a/src/nf_modules/multiqc/multiqc_single.config
+++ b/src/nf_modules/multiqc/multiqc_single.config
@@ -38,7 +38,7 @@ profiles {
         time = "6h"
         queueSize = 1.70
         pollInterval = '60sec'
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
       withName: multiqc {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -50,7 +50,7 @@ profiles {
         time = "6h"
         queueSize = 1.70
         pollInterval = '60sec'
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/music/peak_calling_single.config b/src/nf_modules/music/peak_calling_single.config
index 1dc69007..d6faf0fb 100644
--- a/src/nf_modules/music/peak_calling_single.config
+++ b/src/nf_modules/music/peak_calling_single.config
@@ -44,7 +44,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
       withName: music_preprocessing {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -54,7 +54,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
       withName: music_computation {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -64,7 +64,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/samtools/index_bams.config b/src/nf_modules/samtools/index_bams.config
index f47469c1..d1dbcef1 100644
--- a/src/nf_modules/samtools/index_bams.config
+++ b/src/nf_modules/samtools/index_bams.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/samtools/split_bams.config b/src/nf_modules/samtools/split_bams.config
index 00a83948..3e85e5b0 100644
--- a/src/nf_modules/samtools/split_bams.config
+++ b/src/nf_modules/samtools/split_bams.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/nf_modules/sratoolkit/fastqdump.config b/src/nf_modules/sratoolkit/fastqdump.config
index a0347be8..8263bf55 100644
--- a/src/nf_modules/sratoolkit/fastqdump.config
+++ b/src/nf_modules/sratoolkit/fastqdump.config
@@ -28,7 +28,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
     }
   }
diff --git a/src/training_dataset.config b/src/training_dataset.config
index 98f32abe..96add9d1 100644
--- a/src/training_dataset.config
+++ b/src/training_dataset.config
@@ -124,7 +124,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
       withName: fasta_from_bed {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -134,7 +134,7 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
       withName: index_fasta {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
-- 
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