From 1faa76ad4e2c1160b2b2279e7524ee1a7093bb16 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 7 Oct 2021 14:00:22 +0200
Subject: [PATCH] ucsc: add scape :55
---
src/nf_modules/ucsc/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf
index 28967df5..7eccd022 100644
--- a/src/nf_modules/ucsc/main.nf
+++ b/src/nf_modules/ucsc/main.nf
@@ -52,7 +52,7 @@ process bigwig_to_wig {
bigWigToBedGraph ${params.bigwig_to_wig} \
${bg} \
${bg.simpleName}.bg
-awk '{if(NR>1) {if($1!=lastChrom){printf("variableStep chrom=%s\n",$1);lastChrom=$1;}print $2,$4}}' ${bg.simpleName}.bg > ${bg.simpleName}.wig
+awk '{if(NR>1) {if(\$1!=lastChrom){printf("variableStep chrom=%s\\n",\$1);lastChrom=\$1;}print \$2,\$4}}' ${bg.simpleName}.bg > ${bg.simpleName}.wig
"""
}
--
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