From 1f72b2c4d0a2c38e08230b382a74b06924fc5c6d Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Wed, 14 Apr 2021 18:40:21 +0200 Subject: [PATCH] fastp: update accel_s1plus protocol --- src/nf_modules/fastp/main.nf | 2 ++ 1 file changed, 2 insertions(+) diff --git a/src/nf_modules/fastp/main.nf b/src/nf_modules/fastp/main.nf index 14a4391d..428da793 100644 --- a/src/nf_modules/fastp/main.nf +++ b/src/nf_modules/fastp/main.nf @@ -108,6 +108,7 @@ process fastp_accel_1splus { --disable_quality_filtering \ --disable_length_filtering \ --disable_trim_poly_g \ + --detect_adapter_for_pe \ --stdout \ --in1 ${reads[0]} \ --in2 ${reads[1]} \ @@ -132,6 +133,7 @@ process fastp_accel_1splus { --disable_quality_filtering \ --disable_length_filtering \ --disable_trim_poly_g \ + --detect_adapter_for_pe \ --stdout \ --in1 ${reads[0]} \ --out1 ${file_prefix}_R1_trim.fastq.gz \ -- GitLab