diff --git a/src/nf_modules/deeptools/bam_to_bigwig.config b/src/nf_modules/deeptools/bam_to_bigwig.config index 452ca1c338ae072a84f6f5863bc49fc45e38dabf..75f8575f7a22b66f97bf90241244491cf3dc22f6 100644 --- a/src/nf_modules/deeptools/bam_to_bigwig.config +++ b/src/nf_modules/deeptools/bam_to_bigwig.config @@ -52,4 +52,32 @@ profiles { } } } + ccin2p3 { + process{ + withName: index_bam { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/sambamba/0.6.7/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + process{ + withName: bam_to_bigwig { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/deeptools/3.0.2/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } } diff --git a/src/nf_modules/deeptools/compute_matrix.config b/src/nf_modules/deeptools/compute_matrix.config index 73309d65df3121c016a40fd5a9f14f181bb8aad5..f20b5a82a9af4b7bbcb60bcbbb47f2ec1489a71e 100644 --- a/src/nf_modules/deeptools/compute_matrix.config +++ b/src/nf_modules/deeptools/compute_matrix.config @@ -33,4 +33,19 @@ profiles { } } } + ccin2p3 { + process{ + withName: compute_matrix { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/deeptools/3.0.2/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } } diff --git a/src/nf_modules/deeptools/plot_profile.config b/src/nf_modules/deeptools/plot_profile.config index 9f3ce971b921757a5a9abdff1753b1a6e0800602..d31d37abbc9feca96d1cafaf1dd76fdaef6c60bf 100644 --- a/src/nf_modules/deeptools/plot_profile.config +++ b/src/nf_modules/deeptools/plot_profile.config @@ -33,4 +33,19 @@ profiles { } } } + ccin2p3 { + process{ + withName: plot_profile { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/deeptools/3.0.2/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } }