diff --git a/src/nf_modules/cutadapt/main.nf b/src/nf_modules/cutadapt/main.nf index 7b459f81be147ce6ac0c29bbf9e3542f09a9be3e..a4d08fe873bec6478a3807196376836178ba4391 100644 --- a/src/nf_modules/cutadapt/main.nf +++ b/src/nf_modules/cutadapt/main.nf @@ -19,13 +19,13 @@ process adaptor_removal { path "*_report.txt", emit: report script: -if (reads instanceof List) +if (reads instanceof List) { """ cutadapt ${params.adaptor_removal} \ -o ${pair_id}_cut_R1.fastq.gz -p ${pair_id}_cut_R2.fastq.gz \ ${reads[0]} ${reads[1]} > ${pair_id}_report.txt """ -else: +} else { """ cutadapt ${params.adaptor_removal} \ -o ${file_id}_cut.fastq.gz \