diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf index 41dfbfb4e8f3bee6fcd50bb7f2b9fd2c4e63ffd8..8998f4c8ad93cd56802f4054f7a6dc43e0324cb4 100644 --- a/src/nf_modules/danpos/main.nf +++ b/src/nf_modules/danpos/main.nf @@ -3,7 +3,7 @@ container_url = "biocontainers/danpos:${version}" include { bigwig2_to_wig2 -} from "./nf_modules/ucsc/main.nf" +} from "./../ucsc/main.nf" params.dpos = "--smooth_width 0 -n N " params.dpos_out = "" diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf index eefc67e808c078b5a131515d13ee57d6d7ee80ef..37fed303fb0ca04847ef9c947f00ca28467e31cf 100644 --- a/src/nf_modules/ucsc/main.nf +++ b/src/nf_modules/ucsc/main.nf @@ -3,7 +3,7 @@ container_url = "lbmc/ucsc:${version}" include { index_fasta -} from './nf_modules/samtools/main' +} from './../samtools/main' params.bedgraph_to_bigwig = "" params.bedgraph_to_bigwig_out = ""