From 179127d0b1911c04784ec9dcac0c4a3f8f442632 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 2 Jun 2021 11:00:18 +0200
Subject: [PATCH] gatk4: fix include path
---
src/nf_modules/gatk4/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/gatk4/main.nf b/src/nf_modules/gatk4/main.nf
index 0c1fb950..76ae97ee 100644
--- a/src/nf_modules/gatk4/main.nf
+++ b/src/nf_modules/gatk4/main.nf
@@ -3,12 +3,12 @@ container_url = "broadinstitute/gatk:${version}"
include {
index_fasta as samtools_index_fasta;
-} from './../nf_modules/samtools/main.nf'
+} from './../samtools/main.nf'
include {
index_fasta as picard_index_fasta;
index_bam as picard_index_bam;
mark_duplicate;
-} from './../nf_modules/picard/main.nf'
+} from './../picard/main.nf'
params.variant_calling_out = ""
workflow germline_cohort_data_variant_calling {
--
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