diff --git a/src/nf_modules/gatk4/main.nf b/src/nf_modules/gatk4/main.nf
index 0c1fb95074f8ce01f2c7a063f41d30735da80ee4..76ae97eee4d838e7465e784c4a172e6af993573a 100644
--- a/src/nf_modules/gatk4/main.nf
+++ b/src/nf_modules/gatk4/main.nf
@@ -3,12 +3,12 @@ container_url = "broadinstitute/gatk:${version}"
 
 include {
   index_fasta as samtools_index_fasta;
-} from './../nf_modules/samtools/main.nf'
+} from './../samtools/main.nf'
 include {
   index_fasta as picard_index_fasta;
   index_bam as picard_index_bam;
   mark_duplicate;
-} from './../nf_modules/picard/main.nf'
+} from './../picard/main.nf'
 
 params.variant_calling_out = ""
 workflow germline_cohort_data_variant_calling {