diff --git a/src/docker_modules/hisat2/2.0.0/Dockerfile b/src/docker_modules/hisat2/2.0.0/Dockerfile index 04e439ff0c56d95c12778b08fbce1476868069b5..640d69196c2da6ea52e6aeb5fb69cf241e955d44 100644 --- a/src/docker_modules/hisat2/2.0.0/Dockerfile +++ b/src/docker_modules/hisat2/2.0.0/Dockerfile @@ -1,18 +1,15 @@ -FROM ubuntu:18.04 +FROM samtools:1.7 MAINTAINER Nicolas Fontrodona ENV HISAT2_VERSION=2.0.0 -ENV PACKAGES unzip=6.0* \ - gcc=4:7.3.0* \ - g++=4:7.3.0* \ - make=4.1* \ - python \ - curl=7.58.0* \ - ca-certificates=20180409 +ENV PACKAGES curl \ + zip \ + g++ \ + perl \ + python -RUN apt-get update && \ - apt-get install -y --no-install-recommends ${PACKAGES} && \ - apt-get clean +RUN apk update && \ + apk add ${PACKAGES} RUN curl -k -L http://ccb.jhu.edu/software/hisat2/downloads/hisat2-${HISAT2_VERSION}-beta-source.zip -o hisat2_linux-v${HISAT2_VERSION}.zip && \ unzip hisat2_linux-v${HISAT2_VERSION}.zip && \ @@ -20,5 +17,4 @@ cd hisat2-${HISAT2_VERSION}-beta && \ make && \ cp hisat2 /usr/bin && \ cp hisat2-* /usr/bin && \ -rm -Rf hisat2-${HISAT2_VERSION}-beta - +rm -Rf hisat2-${HISAT2_VERSION}-beta