From 0f3a7c436c46b6ce3ba4fefbbed78ed93ac45d4f Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 20 May 2019 15:30:51 +0200
Subject: [PATCH] in2p3 test: add singularity bind option
---
src/nf_modules/kallisto/indexing.config | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index 35a01e62..76f5091b 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -51,7 +51,7 @@ profiles {
}
ccin2p3_singularity {
singularity.enabled = true
- singularity.autoMounts = true
+ singularity.engineOptions = "--bind /pbs,/sps,/scratch"
process{
withName: index_fasta {
beforeScript = "export SINGULARITY_BIND=\"/sps,/scratch:/var/singularity/mnt/\""
--
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