diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index 35a01e62af6afda6c5db973df1b2679b41400ed7..76f5091bf50f9359494905a625645c4fa742fec7 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -51,7 +51,7 @@ profiles {
   }
   ccin2p3_singularity {
     singularity.enabled = true
-    singularity.autoMounts = true
+    singularity.engineOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: index_fasta {
         beforeScript = "export SINGULARITY_BIND=\"/sps,/scratch:/var/singularity/mnt/\""