From 0df863714600e4a7536765e37cadd91813638c1b Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 21 Sep 2021 14:19:53 +0200
Subject: [PATCH] emase: update Dockerfile but still not working
---
src/.docker_modules/emase/0.10.16/Dockerfile | 16 ++++++++++++++--
1 file changed, 14 insertions(+), 2 deletions(-)
diff --git a/src/.docker_modules/emase/0.10.16/Dockerfile b/src/.docker_modules/emase/0.10.16/Dockerfile
index 6b41883f..94c663fd 100644
--- a/src/.docker_modules/emase/0.10.16/Dockerfile
+++ b/src/.docker_modules/emase/0.10.16/Dockerfile
@@ -3,13 +3,25 @@ MAINTAINER Laurent Modolo
ENV EMASE_VERSION=0.10.16
-RUN apt-get update \
- && apt-get install -y python-h5py \
+RUN
+apt-get update \
+ && apt-get install -y python-h5py libhdf5-dev \
+ && pip install tables \
+ && pip install scipy \
+ && pip install pysam \
&& pip install numpy==1.8.2 \
&& pip install numexpr==2.3.1 \
&& pip install cython>=0.13 \
&& pip install tables==3.1.0 \
&& pip install emase==${EMASE_VERSION}
+pip install numpy==1.8.2
+pip install numexpr==2.3.1
+pip install scipy==0.13.3
+pip install pysam>=0.6
+pip install cython>=0.13
+pip install tables
+pip install biopython>=1.63
+
CMD ["bash"]
--
GitLab