diff --git a/src/nf_modules/kb/main.nf b/src/nf_modules/kb/main.nf index 3668b7b3b588902bab5f05ef9819206ae418bfe9..a6cbfa759925b1bdff0abde20f1942ca40a22b7a 100644 --- a/src/nf_modules/kb/main.nf +++ b/src/nf_modules/kb/main.nf @@ -88,7 +88,7 @@ workflow count { .set{ whitelist_optional } switch(params.kb_protocol) { case "marsseq": - split(fastq, config) + split(fastq, config.collect()) kb_marseq(index.collect(), split.out.fastq, transcript_to_gene.collect(), whitelist_optional.collect()) kb_marseq.out.counts.set{res_counts} kb_marseq.out.report.set{res_report} @@ -280,7 +280,7 @@ workflow count_velocity { .set{ whitelist_optional } switch(params.kb_protocol) { case "marsseq": - split(fastq, config) + split(fastq, config.collect()) velocity_marseq(index.collect(), split.out.fastq, transcript_to_gene.collect(), whitelist_optional.collect()) velocity_marseq.out.counts.set{res_counts} velocity_marseq.out.report.set{res_report}