diff --git a/README.md b/README.md index 2322dbb488ec7be4ec0407a8fec6c99a0fd7f9d6..0dfba8fe623202146267404293bdad5968d74c33 100644 --- a/README.md +++ b/README.md @@ -81,13 +81,17 @@ src/nf_modules/Bowtie2/tests.sh | tool | nf module | docker module | sge module | |------|:---------:|:-------------:|:----------:| BEDtools | ok | ok | ok +BFCtools |**no** | ok | ok +bioawk |**no** | ok | ok Bowtie | ok | ok | **no** Bowtie2 | ok | ok | ok +BWA | ok | ok | ok canu | ok | ok | ok cutadapt | ok | ok | ok deepTools | **no** | ok | ok FastQC | ok | ok | ok file_handle | **no** | ok | ok +GATK | **no** | ok | ok HISAT2 | **no** | ok | **no** HTSeq | ok | ok | ok Kallisto | ok | ok | ok @@ -97,6 +101,8 @@ MUSIC | ok | ok | ok picard | **no** | ok | ok pigz | **no** | ok | ok RSEM | ok | ok | ok +sambamba | ok | ok | ok +samblaster | ok | ok | ok SAMtools | ok | ok | ok SRAtoolkit | ok | ok | ok Salmon | **no** | ok | ok