From 0304aca00d5df565ac26db126d806a87faf05d4b Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 12 Apr 2019 15:46:25 +0200
Subject: [PATCH] kallisto: test of in2p3 config file
---
src/nf_modules/kallisto/indexing.config | 16 ++++++++++++++--
1 file changed, 14 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index 49bc912a..5a80bfb2 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -33,6 +33,18 @@ profiles {
}
}
}
+ ccin2p3 {
+ process{
+ withName: index_fasta {
+ beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/kallisto/0.44.0/:$PATH"
+ executor = "sge"
+ clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n -S '/usr/local/bin/bash -l'"
+ cpus = 4
+ memory = "8GB"
+ time = "24h"
+ queue = 'mc_huge'
+ penv = 'multicores 4'
+ }
+ }
+ }
}
-
-
--
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