diff --git a/src/kallisto_index.pbs b/src/kallisto_index.pbs index 18647fe9a497714ddfc276aa82304608709b73ac..f280ef6bc205de3a77bf4451fdde17b4b95a113c 100644 --- a/src/kallisto_index.pbs +++ b/src/kallisto_index.pbs @@ -25,5 +25,5 @@ PIPELINE=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.nf CONFIG=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.config ${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3_singularity \ ---fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta \ +--fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta" \ -w "${SCRATCH}"