From f34f7a0b879a6b5307a98dc4abacc763ba707d18 Mon Sep 17 00:00:00 2001
From: Nicolas Servant <nicolas.servant@curie.fr>
Date: Fri, 21 May 2021 13:52:23 +0200
Subject: [PATCH] Update main.nf
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Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
---
main.nf | 4 ----
1 file changed, 4 deletions(-)
diff --git a/main.nf b/main.nf
index 349b265..a8611d5 100644
--- a/main.nf
+++ b/main.nf
@@ -128,10 +128,6 @@ if ( params.bwt2_index ){
}
else if ( params.fasta ) {
- //lastPath = params.fasta.lastIndexOf(File.separator)
- //fasta_base = params.fasta.substring(lastPath+1)
- //fasta_base = fasta_base.toString() - ~/(\.fa)?(\.fasta)?(\.fas)?(\.fsa)?$/
-
Channel.fromPath( params.fasta )
.ifEmpty { exit 1, "Genome index: Fasta file not found: ${params.fasta}" }
.into { fasta_for_index }
--
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