diff --git a/workflows/hic.nf b/workflows/hic.nf index fed1114320cbc615259ab66db847887f9eef100d..2ffa5b4dc8bee033473cab5b755befe9460ca0a9 100644 --- a/workflows/hic.nf +++ b/workflows/hic.nf @@ -28,6 +28,9 @@ if (params.digestion){ ch_restriction_site = Channel.value(restriction_site) ligation_site = params.digestion ? params.digest[ params.digestion ].ligation_site ?: false : false ch_ligation_site = Channel.value(ligation_site) +}else if (params.restriction_site && params.ligation_site){ + ch_restriction_site = Channel.value(params.restriction_site) + ch_ligation_site = Channel.value(params.ligation_site) }else if (params.dnase){ ch_restriction_site = Channel.empty() ch_ligation_site = Channel.empty()