From eb0ebae5c3051f50b1bafc924a2a02897aff293d Mon Sep 17 00:00:00 2001
From: Mia Croiset <mia.croiset@ens-lyon.fr>
Date: Mon, 22 Jan 2024 14:36:46 +0100
Subject: [PATCH] try correct writing in pre pairs file
---
bin/hicstuff_build_matrix.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/bin/hicstuff_build_matrix.py b/bin/hicstuff_build_matrix.py
index c8bf3e4..8c47ac3 100755
--- a/bin/hicstuff_build_matrix.py
+++ b/bin/hicstuff_build_matrix.py
@@ -72,7 +72,7 @@ def pairs2matrix(
# )
cmd = 'grep -v ^# %s | sort -S 2G -k8,8n -k9,9n --parallel=1' % pairs_file
- with open(pre_mat_file, "a") as fout:
+ with open(pre_mat_file, "w") as fout:
fout.write(str(os.system(cmd)))
header_size = len(hio.get_pairs_header(pre_mat_file))
--
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