diff --git a/main.nf b/main.nf index ba99843af75bc234a3c7d8d592edcd6504d2291f..f29a49cdbdf00d84f6dc3c3852584315721c341e 100644 --- a/main.nf +++ b/main.nf @@ -362,7 +362,7 @@ if(!params.chromosome_size && params.fasta){ if(!params.restriction_fragments && params.fasta){ process makeRestrictionFragments { - tag "$fasta" + tag "$fasta - ${params.restriction_site}" //publishDir path: { params.saveReference ? "${params.outdir}/reference_genome" : params.outdir }, // saveAs: { params.saveReference ? it : null }, mode: 'copy' @@ -521,12 +521,10 @@ process get_valid_interaction{ """ } - /* * STEP3 - BUILD MATRIX */ -/* process build_contact_maps{ tag "$sample - $mres" input: @@ -541,13 +539,11 @@ process build_contact_maps{ build_matrix --matrix-format upper --binsize ${mres} --chrsizes ${chrsize} --ifile ${vpairs} --oprefix ${sample}_${mres} """ } -*/ /* * STEP 4 - NORMALIZE MATRIX */ -/* process run_iced{ tag "$rmaps" input: @@ -565,7 +561,7 @@ process run_iced{ --max_iter ${params.ice_max_iter} --eps ${params.ice_eps} --remove-all-zeros-loci --output-bias 1 --verbose 1 ${rmaps} """ } -*/ + /* * STEP 5 - COOLER FILE