From cc0944fa968b157f48b369d2b082148a24d99038 Mon Sep 17 00:00:00 2001
From: Mia Croiset <mia.croiset@ens-lyon.fr>
Date: Tue, 29 Aug 2023 15:30:38 +0200
Subject: [PATCH] update modules to add versions
---
conf/base.config | 2 +-
modules/local/hicexplorer/hicPlotMatrix.nf | 5 +++++
2 files changed, 6 insertions(+), 1 deletion(-)
diff --git a/conf/base.config b/conf/base.config
index 384086a..e778a4e 100644
--- a/conf/base.config
+++ b/conf/base.config
@@ -48,7 +48,7 @@ process {
time = { check_max( 20.h * task.attempt, 'time' ) }
}
withLabel:process_high_memory {
- memory = { check_max( 300.GB * task.attempt, 'memory' ) }
+ memory = { check_max( 24.GB * task.attempt, 'memory' ) }
}
withLabel:error_ignore {
errorStrategy = 'ignore'
diff --git a/modules/local/hicexplorer/hicPlotMatrix.nf b/modules/local/hicexplorer/hicPlotMatrix.nf
index de90826..0f93199 100644
--- a/modules/local/hicexplorer/hicPlotMatrix.nf
+++ b/modules/local/hicexplorer/hicPlotMatrix.nf
@@ -20,5 +20,10 @@ process HIC_PLOT_MATRIX {
"""
hicPlotMatrix -m ${cool} -o ${prefix}_cool_log.pdf ${args}
+
+ cat <<-END_VERSIONS > versions.yml
+ "${task.process}":
+ hicexplorer: \$(hicPlotMatrix --version 2>&1 | sed 's/hicPlotMatrix, version //')
+ END_VERSIONS
"""
}
--
GitLab