From c7475fc902c2555c8af646a582bb1ef55a0faa6d Mon Sep 17 00:00:00 2001
From: Nicolas Servant <nicolas.servant@curie.fr>
Date: Thu, 3 Sep 2020 08:46:45 +0200
Subject: [PATCH] Update main.nf
Co-authored-by: mashehu <mashehu@users.noreply.github.com>
---
main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/main.nf b/main.nf
index 495a1fe..3528a41 100644
--- a/main.nf
+++ b/main.nf
@@ -34,7 +34,7 @@ def helpMessage() {
--save_reference [bool] Save reference genome to output folder. Default: False
Alignments
- --split_fastq [bool] Split fastq files in reads chunks to speed up computation. Default: None
+ --split_fastq [bool] Split fastq files in reads chunks to speed up computation. Default: false
--fastq_chunks_size [int] Size of read chunks if split_fastq is true. Default: 20000000
--save_aligned_intermediates [bool] Save intermediates alignment files. Default: False
--bwt2_opts_end2end [str] Options for bowtie2 end-to-end mappinf (first mapping step). See hic.config for default.
--
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