diff --git a/main.nf b/main.nf index 697c12cfd2312b464d0edb78843ee3f0dd438473..67ba0b8931183c7035354e178cdd6fe47f08c99c 100644 --- a/main.nf +++ b/main.nf @@ -245,6 +245,12 @@ summary['Restriction Motif']= params.restriction_site summary['Ligation Motif'] = params.ligation_site summary['DNase Mode'] = params.dnase summary['Remove Dup'] = params.rm_dup +summary['Min MAPQ'] = params.min_mapq +summary['Min Fragment Size']= params.min_restriction_fragment_size +summary['Max Fragment Size']= params.max_restriction_framgnet_size +summary['Min Insert Size'] = params.min_insert_size +summary['Max Insert Size'] = params.max_insert_size +summary['Min CIS dist'] = params.min_cis_dist summary['Maps resolution'] = params.bin_size summary['Max Memory'] = params.max_memory