From a91249cf61ed73112685dc0cc8b57c968bc7dd1b Mon Sep 17 00:00:00 2001
From: nservant <nicolas.servant@curie.fr>
Date: Mon, 19 Apr 2021 09:21:19 +0200
Subject: [PATCH] [BUG] fix bugsin publishdir
---
main.nf | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/main.nf b/main.nf
index 291ed4b..8f6fffb 100644
--- a/main.nf
+++ b/main.nf
@@ -683,7 +683,8 @@ process remove_duplicates {
tag "$sample"
label 'process_highmem'
publishDir "${params.outdir}/hicpro/valid_pairs", mode: params.publish_dir_mode,
- saveAs: {filename -> filename.endsWith("stat") ? "stats/$filename" : "$filename"}
+ saveAs: {filename -> if (filename.endsWith("mergestat")) "stats/$filename"
+ else if (filename.endsWith("allValidPairs")) "$filename"}
input:
set val(sample), file(vpairs) from valid_pairs.groupTuple()
@@ -735,7 +736,7 @@ process merge_stats {
tag "$ext"
label 'process_low'
publishDir "${params.outdir}/hicpro/", mode: params.publish_dir_mode,
- saveAs: {filename -> filename.endsWith("stat") ? "stats/$filename" : "$filename"}
+ saveAs: {filename -> if (filename.endsWith("stat")) "stats/$filename"}
input:
set val(prefix), file(fstat) from all_mapstat.groupTuple().concat(all_pairstat.groupTuple(), all_rsstat.groupTuple())
--
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