From 9b7e1961f77885c175bc8f9883cc5d380677bdfe Mon Sep 17 00:00:00 2001
From: Nicolas Servant <nicolas.servant@curie.fr>
Date: Fri, 6 Jan 2023 18:22:59 +0100
Subject: [PATCH] Update hic.nf
inline channel build as suggested by @maxulysse
---
workflows/hic.nf | 16 ++++------------
1 file changed, 4 insertions(+), 12 deletions(-)
diff --git a/workflows/hic.nf b/workflows/hic.nf
index 834afc0..faa6a59 100644
--- a/workflows/hic.nf
+++ b/workflows/hic.nf
@@ -56,12 +56,8 @@ if (params.res_tads && !params.skip_tads){
}
if (params.res_dist_decay && !params.skip_dist_decay){
- Channel.from( "${params.res_dist_decay}" )
- .splitCsv()
- .flatten()
- .toInteger()
- .set {ch_ddecay_res}
- ch_map_res = ch_map_res.concat(ch_ddecay_res)
+ ch_ddecay_res = Channel.from( "${params.res_dist_decay}" ).splitCsv().flatten().toInteger()
+ ch_map_res = ch_map_res.concat(ch_ddecay_res)
}else{
ch_ddecay_res = Channel.empty()
if (!params.skip_dist_decay){
@@ -70,12 +66,8 @@ if (params.res_dist_decay && !params.skip_dist_decay){
}
if (params.res_compartments && !params.skip_compartments){
- Channel.from( "${params.res_compartments}" )
- .splitCsv()
- .flatten()
- .toInteger()
- .set {ch_comp_res}
- ch_map_res = ch_map_res.concat(ch_comp_res)
+ ch_comp_res = Channel.from( "${params.res_compartments}" ).splitCsv().flatten().toInteger()
+ ch_map_res = ch_map_res.concat(ch_comp_res)
}else{
ch_comp_res = Channel.empty()
if (!params.skip_compartments){
--
GitLab