From 97e9f94c1fbf284fcc876347fb41e6f2cccc2ce0 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 26 Jul 2024 10:58:48 +0200
Subject: [PATCH] change default option for hicstuff bowtie2 mapping end to end
---
nextflow.config | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/nextflow.config b/nextflow.config
index bca7a2b..d8fc754 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -138,7 +138,7 @@ params {
max_time = '240.h'
// Hicstuff
- hicstuff_bwt2_align_opts = '--very-sensitive-local'
+ hicstuff_bwt2_align_opts = '--very-sensitive'
hicstuff_min_size = 0
hicstuff_circular = 'false'
hicstuff_output_contigs = 'info_contigs.txt'
--
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