diff --git a/main.nf b/main.nf index 31f73a8549e76b246fe05981c0c2735b5605090e..82365f1a0c1a24172fcfdb05b787a6a9235e7bff 100644 --- a/main.nf +++ b/main.nf @@ -42,7 +42,7 @@ def helpMessage() { --restriction_site Cutting motif(s) of restriction enzyme(s) (comma separated). Default: 'A^AGCTT' --ligation_site Ligation motifs to trim (comma separated). Default: 'AAGCTAGCTT' --min_restriction_fragment_size Minimum size of restriction fragments to consider. Default: None - --max_restriction_framgnet_size Maximum size of restriction fragmants to consider. Default: None + --max_restriction_fragment_size Maximum size of restriction fragments to consider. Default: None --min_insert_size Minimum insert size of mapped reads to consider. Default: None --max_insert_size Maximum insert size of mapped reads to consider. Default: None --saveInteractionBAM Save BAM file with interaction tags (dangling-end, self-circle, etc.). Default: False