diff --git a/docs/benchmark.md b/docs/benchmark.md index f5c7a12e528c4cde8de4840b889cdd5778776ab6..09e4fe80037f24d97da626f81596de55cbe49997 100644 --- a/docs/benchmark.md +++ b/docs/benchmark.md @@ -94,12 +94,12 @@ No filter vs filter (iterative) | No filter vs filter pcr (iterative) No filter vs filter (parasplit) | No filter vs filter pcr (parasplit) | No filter vs both (parasplit) :-------------------------:|:-------------------------:|:-------------------------: - |  |  + |  |  No filter vs filter (cutsite) | No filter vs filter pcr (cutsite) | No filter vs both (cutsite) :-------------------------:|:-------------------------:|:-------------------------: - |  |  + |  |  We still have the line on the diagonal for the filtering option, same as with normal alignment, regardless of the color which is depending of which condition is place as the first or second matrix in the formula, and intensity of color which is higher for parasplit and cutsite, due to their high number of contact. diff --git a/docs/images/chr3_1a.png b/docs/images/chr3_1a.png new file mode 100644 index 0000000000000000000000000000000000000000..5ace7adaf7b36c19b67aab5d2e39e1c60d139ffb Binary files /dev/null and b/docs/images/chr3_1a.png differ diff --git a/docs/images/chr3_1b.png b/docs/images/chr3_1b.png new file mode 100644 index 0000000000000000000000000000000000000000..61fd9a3a8e3e21e23ed8f476ad08993cd874d0b2 Binary files /dev/null and b/docs/images/chr3_1b.png differ diff --git a/docs/images/chr3_2a.png b/docs/images/chr3_2a.png new file mode 100644 index 0000000000000000000000000000000000000000..e3c103c55da5b770dac246088da9500100f89b17 Binary files /dev/null and b/docs/images/chr3_2a.png differ diff --git a/docs/images/chr3_2b.png b/docs/images/chr3_2b.png new file mode 100644 index 0000000000000000000000000000000000000000..23c9985bf525bace9cb16621d7e68dd60f3a47dc Binary files /dev/null and b/docs/images/chr3_2b.png differ diff --git a/docs/images/chr3_2c.png b/docs/images/chr3_2c.png new file mode 100644 index 0000000000000000000000000000000000000000..4618bdf3db67970f4e8e7b1894c5149d995a94ca Binary files /dev/null and b/docs/images/chr3_2c.png differ