From 88dc793d8d6dec723c2c5393becaf0789028e1b5 Mon Sep 17 00:00:00 2001
From: Adam Talbot <adam.talbot@seqera.io>
Date: Tue, 23 May 2023 16:55:48 +0100
Subject: [PATCH] Add BOWTIE2_ALIGN_TRIMMED to use mulled container
---
conf/public_aws_ecr.config | 3 +++
1 file changed, 3 insertions(+)
diff --git a/conf/public_aws_ecr.config b/conf/public_aws_ecr.config
index a126435..4979017 100644
--- a/conf/public_aws_ecr.config
+++ b/conf/public_aws_ecr.config
@@ -15,6 +15,9 @@ process {
withName: '.*:BOWTIE2_ALIGN' {
container = 'quay.io/biocontainers/mulled-v2-ac74a7f02cebcfcc07d8e8d1d750af9c83b4d45a:a0ffedb52808e102887f6ce600d092675bf3528a-0'
}
+ withName: '.*:BOWTIE2_ALIGN_TRIMMED' {
+ container = 'quay.io/biocontainers/mulled-v2-ac74a7f02cebcfcc07d8e8d1d750af9c83b4d45a:a0ffedb52808e102887f6ce600d092675bf3528a-0'
+ }
withName: '.*:BUILD_CONTACT_MAPS' {
container = 'quay.io/nf-core/ubuntu:20.04'
}
--
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