From 8110985a7244aeb9c328bc6ddfcd508678bb1f9f Mon Sep 17 00:00:00 2001
From: nservant <nicolas.servant@curie.fr>
Date: Fri, 27 Nov 2020 20:41:43 +0100
Subject: [PATCH] remove single_end from config
---
.github/workflows/push_dockerhub.yml | 40 ----------------------------
nextflow.config | 1 -
2 files changed, 41 deletions(-)
delete mode 100644 .github/workflows/push_dockerhub.yml
diff --git a/.github/workflows/push_dockerhub.yml b/.github/workflows/push_dockerhub.yml
deleted file mode 100644
index 280f8ba..0000000
--- a/.github/workflows/push_dockerhub.yml
+++ /dev/null
@@ -1,40 +0,0 @@
-name: nf-core Docker push
-# This builds the docker image and pushes it to DockerHub
-# Runs on nf-core repo releases and push event to 'dev' branch (PR merges)
-on:
- push:
- branches:
- - dev
- release:
- types: [published]
-
-jobs:
- push_dockerhub:
- name: Push new Docker image to Docker Hub
- runs-on: ubuntu-latest
- # Only run for the nf-core repo, for releases and merged PRs
- if: ${{ github.repository == 'nf-core/hic' }}
- env:
- DOCKERHUB_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }}
- DOCKERHUB_PASS: ${{ secrets.DOCKERHUB_PASS }}
- steps:
- - name: Check out pipeline code
- uses: actions/checkout@v2
-
- - name: Build new docker image
- run: docker build --no-cache . -t nfcore/hic:latest
-
- - name: Push Docker image to DockerHub (dev)
- if: ${{ github.event_name == 'push' }}
- run: |
- echo "$DOCKERHUB_PASS" | docker login -u "$DOCKERHUB_USERNAME" --password-stdin
- docker tag nfcore/hic:latest nfcore/hic:dev
- docker push nfcore/hic:dev
-
- - name: Push Docker image to DockerHub (release)
- if: ${{ github.event_name == 'release' }}
- run: |
- echo "$DOCKERHUB_PASS" | docker login -u "$DOCKERHUB_USERNAME" --password-stdin
- docker push nfcore/hic:latest
- docker tag nfcore/hic:latest nfcore/hic:${{ github.event.release.tag_name }}
- docker push nfcore/hic:${{ github.event.release.tag_name }}
diff --git a/nextflow.config b/nextflow.config
index 32fe8f8..b5089d5 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -11,7 +11,6 @@ params {
// Workflow flags
genome = false
input = "data/*{1,2}.fastq.gz"
- single_end = false
outdir = './results'
genome = false
--
GitLab