From 725a7fa16c209cbacd33a1491d3cc2837fac9a4a Mon Sep 17 00:00:00 2001
From: nservant <nicolas.servant@curie.fr>
Date: Fri, 22 Jan 2021 22:04:49 +0100
Subject: [PATCH] [MODIF] edit README
---
main.nf | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/main.nf b/main.nf
index a871e29..2e42bab 100644
--- a/main.nf
+++ b/main.nf
@@ -1024,6 +1024,34 @@ process dist_decay {
"""
}
+/*
+ * Compartment calling
+ */
+
+/*
+chcomp = iced_maps_comp.combine(comp_res).filter{ it[1] == it[4] }.dump(tag: "comp")
+
+process compartment_calling {
+ tag "$sample - $res"
+ label 'process_medium'
+ publishDir "${params.outdir}/compartments", mode: 'copy'
+
+ when:
+ !params.skip_compartments
+
+ input:
+ set val(sample), val(res), file(mat), file(bed), val(r) from chcomp
+
+ output:
+ file("*.bedgraph") optional true into out_compartments
+
+ script:
+ """
+ call_compartments.r --matrix ${mat} --bed ${bed}
+ """
+}
+*/
+
/*
* TADs calling
--
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