diff --git a/bin/hicstuff_io.py b/bin/hicstuff_io.py index c8c4dde924c52d5e44661a3e528acf1cae53388e..2aac719b31fbab18dee08538a3e1a322bb778f30 100644 --- a/bin/hicstuff_io.py +++ b/bin/hicstuff_io.py @@ -1217,6 +1217,8 @@ def sort_pairs(in_file, out_file, keys, tmp_dir=None, threads=1, buffer="2G"): sort_cmd.append("--temporary-directory={0}".format(tmp_dir)) if parallel_ok: sort_cmd.append("--parallel={0}".format(threads)) + print(sort_cmd) + print(grep_proc) sort_proc = sp.Popen(sort_cmd, stdin=grep_proc.stdout, stdout=output) sort_proc.communicate()