From 6cc3893175b392f871ded9073876d0f5d913aa92 Mon Sep 17 00:00:00 2001
From: nservant <nicolas.servant@curie.fr>
Date: Mon, 6 Jul 2020 18:55:36 +0200
Subject: [PATCH] [Fix] bug in --fasta parameter
---
main.nf | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/main.nf b/main.nf
index 10a1b95..565dbf1 100644
--- a/main.nf
+++ b/main.nf
@@ -181,9 +181,9 @@ if ( params.bwt2_index ){
}
else if ( params.fasta ) {
- lastPath = params.fasta.lastIndexOf(File.separator)
- fasta_base = params.fasta.substring(lastPath+1)
- bwt2_base = fasta_base.toString() - ~/(\.fa)?(\.fasta)?(\.fas)?(\.fsa)?$/
+ lastPath = params.fasta.lastIndexOf(File.separator)
+ fasta_base = params.fasta.substring(lastPath+1)
+ bwt2_base = fasta_base.toString() - ~/(\.fa)?(\.fasta)?(\.fas)?(\.fsa)?$/
Channel.fromPath( params.fasta )
.ifEmpty { exit 1, "Genome index: Fasta file not found: ${params.fasta}" }
--
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