diff --git a/main.nf b/main.nf index 10a1b954e56117a3d0d30636e22f9501ec3dd762..565dbf19bcdc80620010617520070d8001884bdc 100644 --- a/main.nf +++ b/main.nf @@ -181,9 +181,9 @@ if ( params.bwt2_index ){ } else if ( params.fasta ) { - lastPath = params.fasta.lastIndexOf(File.separator) - fasta_base = params.fasta.substring(lastPath+1) - bwt2_base = fasta_base.toString() - ~/(\.fa)?(\.fasta)?(\.fas)?(\.fsa)?$/ + lastPath = params.fasta.lastIndexOf(File.separator) + fasta_base = params.fasta.substring(lastPath+1) + bwt2_base = fasta_base.toString() - ~/(\.fa)?(\.fasta)?(\.fas)?(\.fsa)?$/ Channel.fromPath( params.fasta ) .ifEmpty { exit 1, "Genome index: Fasta file not found: ${params.fasta}" }