From 6c7516073b2652bf1239f1b75c93750e2a77bfad Mon Sep 17 00:00:00 2001
From: nservant <nicolas.servant@curie.fr>
Date: Wed, 2 Sep 2020 18:03:08 +0200
Subject: [PATCH] update help
---
main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/main.nf b/main.nf
index 5f7e943..5763152 100644
--- a/main.nf
+++ b/main.nf
@@ -34,7 +34,7 @@ def helpMessage() {
--save_reference [bool] Save reference genome to output folder. Default: False
Alignments
- --split_fastq [bool] Size of read chuncks to use to speed up the workflow. Default: None
+ --split_fastq [int] Size of read chuncks to use to speed up the workflow. Default: None
--save_aligned_intermediates [bool] Save intermediates alignment files. Default: False
--bwt2_opts_end2end [str] Options for bowtie2 end-to-end mappinf (first mapping step). See hic.config for default.
--bwt2_opts_trimmed [str] Options for bowtie2 mapping after ligation site trimming. See hic.config for default.
--
GitLab