diff --git a/main.nf b/main.nf index 5f7e943327ce8163c0c6c1bc373e97c02b864907..5763152152e33888df2a88d9360f75a46c7cb6d1 100644 --- a/main.nf +++ b/main.nf @@ -34,7 +34,7 @@ def helpMessage() { --save_reference [bool] Save reference genome to output folder. Default: False Alignments - --split_fastq [bool] Size of read chuncks to use to speed up the workflow. Default: None + --split_fastq [int] Size of read chuncks to use to speed up the workflow. Default: None --save_aligned_intermediates [bool] Save intermediates alignment files. Default: False --bwt2_opts_end2end [str] Options for bowtie2 end-to-end mappinf (first mapping step). See hic.config for default. --bwt2_opts_trimmed [str] Options for bowtie2 mapping after ligation site trimming. See hic.config for default.