diff --git a/Dockerfile b/Dockerfile index bd89e7eed206414d6257f30f7ed2ebd91fb23971..7fbde06d5f4879565af04b15ee2ec48f71e4ac14 100644 --- a/Dockerfile +++ b/Dockerfile @@ -7,4 +7,4 @@ RUN apt-get update && apt-get install -y gcc g++ && apt-get clean -y COPY environment.yml / RUN conda env create -f /environment.yml && conda clean -a -ENV PATH /opt/conda/envs/nf-core-hic-1.1.0dev/bin:$PATH +ENV PATH /opt/conda/envs/nf-core-hic-1.1.0/bin:$PATH diff --git a/environment.yml b/environment.yml index 1a69ba7ac34662b5d0c7f808d50d7dd5b86899c3..1c253c2947f2a3b7a6b766fa1fd3ead35219188c 100644 --- a/environment.yml +++ b/environment.yml @@ -4,7 +4,6 @@ name: nf-core-hic-1.1.0 channels: - conda-forge - bioconda - - bioconda/label/cf201901 - defaults dependencies: - python=2.7.15 @@ -13,7 +12,7 @@ dependencies: - numpy=1.16.3 - r-markdown=0.9 - bx-python=0.8.2 - - pysam=0.15.2 + - bioconda::pysam=0.15.2 - cooler=0.8.5 - bowtie2=2.3.5 - samtools=1.9