From 633049476f82fba859441b0849d8bc49f2df0c54 Mon Sep 17 00:00:00 2001
From: nservant <nservant@curie.fr>
Date: Tue, 16 Apr 2019 21:42:26 +0200
Subject: [PATCH] update config for test
---
conf/base.config | 10 ++++------
conf/test.config | 4 ++--
2 files changed, 6 insertions(+), 8 deletions(-)
diff --git a/conf/base.config b/conf/base.config
index ba72768..7f99f28 100644
--- a/conf/base.config
+++ b/conf/base.config
@@ -22,20 +22,18 @@ process {
maxErrors = '-1'
// Process-specific resource requirements
-
withName:makeBowtie2Index {
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 10.GB * task.attempt, 'memory' ) }
time = { check_max( 12.h * task.attempt, 'time' ) }
}
-
withName:bowtie2_end_to_end {
- cpus = { check_max( 2, 'cpus' ) }
+ cpus = { check_max( 4, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = { check_max( 5.h * task.attempt, 'time' ) }
}
withName:bowtie2_on_trimmed_reads {
- cpus = { check_max( 2, 'cpus' ) }
+ cpus = { check_max( 4, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = { check_max( 5.h * task.attempt, 'time' ) }
}
@@ -59,12 +57,12 @@ process {
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = { check_max( 5.h * task.attempt, 'time' ) }
}
- withName:build_contact_maps {
+ withName:build_contact_maps {
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 6.GB * task.attempt, 'memory' ) }
time = { check_max( 5.h * task.attempt, 'time' ) }
}
-withName:run_ice {
+ withName:run_ice {
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 10.GB * task.attempt, 'memory' ) }
time = { check_max( 5.h * task.attempt, 'time' ) }
diff --git a/conf/test.config b/conf/test.config
index d8220d2..5116019 100644
--- a/conf/test.config
+++ b/conf/test.config
@@ -13,8 +13,8 @@ params {
config_profile_description = 'Minimal test dataset to check pipeline function'
// Limit resources so that this can run on Travis
- max_cpus = 4
- max_memory = 6.GB
+ max_cpus = 2
+ max_memory = 4.GB
max_time = 1.h
// Input data
--
GitLab