From 5f8dff525c2518a4ab31aa850731e3d68149bea1 Mon Sep 17 00:00:00 2001
From: Adam Talbot <adam.talbot@seqera.io>
Date: Mon, 22 May 2023 17:57:46 +0100
Subject: [PATCH] ubuntu:20.04 to nf-core version
---
modules/local/hicpro/build_contact_maps.nf | 2 +-
modules/local/hicpro/merge_valid_interaction.nf | 2 +-
modules/local/hicpro/trim_reads.nf | 2 +-
modules/local/split_cooler_dump.nf | 2 +-
4 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/modules/local/hicpro/build_contact_maps.nf b/modules/local/hicpro/build_contact_maps.nf
index c4e4616..34b27aa 100644
--- a/modules/local/hicpro/build_contact_maps.nf
+++ b/modules/local/hicpro/build_contact_maps.nf
@@ -5,7 +5,7 @@ process BUILD_CONTACT_MAPS{
conda "conda-forge::sed=4.7"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
- 'nfcore/ubuntu:20.04' }"
+ 'quay.io/nf-core/ubuntu:20.04' }"
input:
tuple val(meta), path(vpairs), val(resolution)
diff --git a/modules/local/hicpro/merge_valid_interaction.nf b/modules/local/hicpro/merge_valid_interaction.nf
index 6a5c830..25c437e 100644
--- a/modules/local/hicpro/merge_valid_interaction.nf
+++ b/modules/local/hicpro/merge_valid_interaction.nf
@@ -5,7 +5,7 @@ process MERGE_VALID_INTERACTION {
conda "conda-forge::gawk=5.1.0"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
- 'nfcore/ubuntu:20.04' }"
+ 'quay.io/nf-core/ubuntu:20.04' }"
input:
tuple val(meta), path(vpairs)
diff --git a/modules/local/hicpro/trim_reads.nf b/modules/local/hicpro/trim_reads.nf
index f6d2e90..b9f2ea4 100644
--- a/modules/local/hicpro/trim_reads.nf
+++ b/modules/local/hicpro/trim_reads.nf
@@ -5,7 +5,7 @@ process TRIM_READS {
conda "conda-forge::sed=4.7"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
- 'nfcore/ubuntu:20.04' }"
+ 'quay.io/nf-core/ubuntu:20.04' }"
input:
tuple val(meta), path(reads)
diff --git a/modules/local/split_cooler_dump.nf b/modules/local/split_cooler_dump.nf
index c9dde00..5e392c1 100644
--- a/modules/local/split_cooler_dump.nf
+++ b/modules/local/split_cooler_dump.nf
@@ -5,7 +5,7 @@ process SPLIT_COOLER_DUMP {
conda "conda-forge::gawk=5.1.0"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
- 'nfcore/ubuntu:20.04' }"
+ 'quay.io/nf-core/ubuntu:20.04' }"
input:
tuple val(meta), path(bedpe)
--
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