diff --git a/conf/test_full.config b/conf/test_full.config index a9a8183f5a25829e8f323446234ac89ab6dc4353..f7b39d4fe2c22e98608b0ce00dec75274bde30ca 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -14,10 +14,14 @@ params { config_profile_description = 'Full test dataset to check pipeline function' // Input data for full size test - // TODO nf-core: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA) - // TODO nf-core: Give any required params for the test so that command line flags are not needed - input = 'https://raw.githubusercontent.com/nf-core/test-datasets/viralrecon/samplesheet/samplesheet_full_illumina_amplicon.csv' + input = 'https://raw.githubusercontent.com/nf-core/test-datasets/hic/samplesheet/samplesheet_HiC_mESC_full_test.csv' // Genome references - genome = 'R64-1-1' + genome = 'mm10' + + // Other options + digestion = 'dpnii' + bin_size = '40000,250000,500000,1000000' + res_compartments = '500000,250000' + res_tads = '40000,20000' }