diff --git a/conf/base.config b/conf/base.config index ba727689b33c231968eb67cb9b4e119416bd98ab..7f99f28907f6c88829f0cc094de6672a4bacd873 100644 --- a/conf/base.config +++ b/conf/base.config @@ -22,20 +22,18 @@ process { maxErrors = '-1' // Process-specific resource requirements - withName:makeBowtie2Index { cpus = { check_max( 1, 'cpus' ) } memory = { check_max( 10.GB * task.attempt, 'memory' ) } time = { check_max( 12.h * task.attempt, 'time' ) } } - withName:bowtie2_end_to_end { - cpus = { check_max( 2, 'cpus' ) } + cpus = { check_max( 4, 'cpus' ) } memory = { check_max( 4.GB * task.attempt, 'memory' ) } time = { check_max( 5.h * task.attempt, 'time' ) } } withName:bowtie2_on_trimmed_reads { - cpus = { check_max( 2, 'cpus' ) } + cpus = { check_max( 4, 'cpus' ) } memory = { check_max( 4.GB * task.attempt, 'memory' ) } time = { check_max( 5.h * task.attempt, 'time' ) } } @@ -59,12 +57,12 @@ process { memory = { check_max( 4.GB * task.attempt, 'memory' ) } time = { check_max( 5.h * task.attempt, 'time' ) } } - withName:build_contact_maps { + withName:build_contact_maps { cpus = { check_max( 1, 'cpus' ) } memory = { check_max( 6.GB * task.attempt, 'memory' ) } time = { check_max( 5.h * task.attempt, 'time' ) } } -withName:run_ice { + withName:run_ice { cpus = { check_max( 1, 'cpus' ) } memory = { check_max( 10.GB * task.attempt, 'memory' ) } time = { check_max( 5.h * task.attempt, 'time' ) } diff --git a/conf/test.config b/conf/test.config index d8220d289a7dda6a9d134e2e1a14715a2d2c5c74..511601987f1eb45cc32ca9d5d8eccd71b8c0e41a 100644 --- a/conf/test.config +++ b/conf/test.config @@ -13,8 +13,8 @@ params { config_profile_description = 'Minimal test dataset to check pipeline function' // Limit resources so that this can run on Travis - max_cpus = 4 - max_memory = 6.GB + max_cpus = 2 + max_memory = 4.GB max_time = 1.h // Input data