diff --git a/CHANGELOG.md b/CHANGELOG.md index 835ea6a50a8515df51901694ebfdfce9d26cadf2..34cdbc8671e4341e2dde2af6a73098d3637b7c6b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,12 +10,29 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. * Bump v1.2.0dev * Merge template nf-core 1.9 * Move some options to camel_case -* Update conda environment file * Update python scripts for python3 +* Update conda environment file + * python base `2.7.15` > `3.7.6` + * pip `19.1` > `20.0.1` + * scipy `1.2.1` > `1.4.1` + * numpy `1.16.3` > `1.18.1` + * bx-python `0.8.2` > `0.8.8` + * pysam `0.15.2` > `0.15.4` + * cooler `0.8.5` > `0.8.6` + * multiqc `1.7` > `1.8` + * iced `0.5.1` > `0.5.6` + * *_New_* pymdown-extensions `7.1` + * *_New_* hicexplorer `3.4.3` + * *_New_* bioconductor-hitc `1.32.0` + * *_New_* r-optparse `1.6.6` + * *_New_* ucsc-bedgraphtobigwig `377` + * *_New_* cooltools `0.3.2` + * *_New_* fanc `0.8.30` + * *_Removed_* r-markdown ### `Fixed` -* Fix a bug in rm_dup in file sorting +* Sort output of `get_valid_interaction` process as the input files of `remove_duplicates` are expected to be sorted (sort -m) ### `Deprecated`