From 35bdac8e2f0be0d1f823e41578cac83b50515b7a Mon Sep 17 00:00:00 2001
From: Mia Croiset <mia.croiset@ens-lyon.fr>
Date: Mon, 12 Jun 2023 16:03:38 +0200
Subject: [PATCH] refactorisation add filter_pcr_picard to schema
---
nextflow_schema.json | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/nextflow_schema.json b/nextflow_schema.json
index a0c4330..811f414 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -197,6 +197,10 @@
"type": "boolean",
"description": "Keep multi-aligned reads"
},
+ "filter_pcr_picard": {
+ "type": "boolean",
+ "description": "Filter PCR duplicates with PICARD MarkDuplicates"
+ },
"max_insert_size": {
"type": "integer",
"description": "Maximum fragment size to consider. Only values > 0 are considered"
--
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